Bad mark for a boy getting out of line (5)
I believe the answer is:
stain
'bad mark' is the definition.
(I've seen this in another clue)
I don't understand the remainder of the clue.
Can you help me to learn more?
(Other definitions for stain that I've seen before include "Discolouration" , "Blotch on satin" , "Taint" , "Blemish; colour (wood)" , "Black mark for saint" .)