Mark Twain referred to it with profundity (5)
I believe the answer is:
depth
'profundity' is the definition.
(synonyms)
I don't understand how the rest of the clue works.
Can you help me to learn more?
(Other definitions for depth that I've seen before include "Distance from the surface to the bottom" , "Distance from top down as in water" , "Distance downwards" , "Insight" , "Thoroughness" .)